Jonathan Allen is the author of A Sermon Delivered December 31st, 1794, at the Funeral of Mrs. Mehitable Dutch, A Sermon Preached at the Ordination of the Rev. Ebenezer Allen, A.M., to the Pastoral Care of the Church and Congregation in Wolfborough, October 25, 1792, A Sermon preached at the ordination of the Rev. Benjamin Thurston to the pastoral care of the Church at Northampton, A Sermon, Preached at the Ordination of the Rev. Benjamin Thurston, A.M, Jonathan Allen.